Segmentation of images with low-contrast edges

A vast amount of the current research in medical image analysis has aimed to develop improved techniques of image segmentation. Of the existing approaches, active contour methods have proven effective by incorporating edge or region information from the image into a level set formulation. However, complications arise in images containing regions of low-contrast due to noise, occlusions, or partial volume effects, which are often unavoidable in practical applications. Incorporating prior shape information into the segmentation framework provides a more accurate and robust solution by constraining the evolving contour to resemble a target shape. Two methods are presented to incorporate a shape prior into existing active contour segmentation methods, including the edge-based geodesic active contours model and a fast update implementation of the region-based Chan-Vese model. Applying these methods to synthetic and real images demonstrates that an improved result can be obtained for images containing low-contrast edge regions

The observation of photon echoes from evanescently coupled rare-earth ions in a planar waveguide

We report the measurement of the inhomogeneous linewidth, homogeneous linewidth and spin state lifetime of Pr3+ ions in a novel waveguide architecture. The TeO2 slab waveguide deposited on a bulk Pr3+:Y2SiO5 crystal allows the 3H4 - 1D2 transition of Pr3+ ions to be probed by the optical evanescent field that extends into the substrate. The 2 GHz inhomogeneous linewidth, the optical coherence time of 70 +- 5 us, and the spin state lifetime of 9.8 +- 0.3 s indicate that the properties of ions interacting with the waveguide mode are consistent with those of bulk ions. This result establishes the foundation for large, integrated and high performance rare-earth-ion quantum systems based on a waveguide platform.Comment: 5 pages, 5 figure

Large-scale variation in density of an aquatic ecosystem indicator species

Funding: This work was supported by the New York State Department of Environmental Conservation and the Hudson River Natural Resource Trustees.Monitoring indicator species is a pragmatic approach to natural resource assessments, especially when the link between the indicator species and ecosystem state is well justified. However, conducting ecosystem assessments over representative spatial scales that are insensitive to local heterogeneity is challenging. We examine the link between polychlorinated biphenyl (PCB) contamination and population density of an aquatic habitat specialist over a large spatial scale using non-invasive genetic spatial capture-recapture. Using American mink (Neovison vison), a predatory mammal and an indicator of aquatic ecosystems, we compared estimates of density in two major river systems, one with extremely high levels of PCB contamination (Hudson River), and a hydrologically independent river with lower PCB levels (Mohawk River). Our work supports the hypothesis that mink densities are substantially (1.64-1.67 times) lower in the contaminated river system. We demonstrate the value of coupling the indicator species concept with well-conceived and spatially representative monitoring protocols. PCBs have demonstrable detrimental effects on aquatic ecosystems, including mink, and these effects are likely to be profound and long-lasting, manifesting as population-level impacts. Through integrating non-invasive data collection, genetic analysis, and spatial capture-recapture methods, we present a monitoring framework for generating robust density estimates across large spatial scales.Publisher PDFPeer reviewe

Decoupling the Spread of Grasslands from the Evolution of Grazer-type Herbivores in South America

The evolution of high-crowned cheek teeth (hypsodonty) in herbivorous mammals during the late Cenozoic is classically regarded as an adaptive response to the near-global spread of grass-dominated habitats. Precocious hypsodonty in middle Eocene (~38 million years (Myr) ago) faunas from Patagonia, South America, is therefore thought to signal Earth’s first grasslands, 20 million years earlier than elsewhere. Here, using a high-resolution, 43–18 million-year record of plant silica (phytoliths) from Patagonia, we show that although open-habitat grasses existed in southern South America since the middle Eocene (~40 Myr ago), they were minor floral components in overall forested habitats between 40 and 18 Myr ago. Thus, distinctly different, continent-specific environmental conditions (arid grasslands versus ash-laden forests) triggered convergent cheek–tooth evolution in Cenozoic herbivores. Hypsodonty evolution is an important example where the present is an insufficient key to the past, and contextual information from fossils is vital for understanding processes of adaptation

Decoupling the spread of grasslands from the evolution of grazer-type herbivores in South America

The evolution of high-crowned cheek teeth (hypsodonty) in herbivorous mammals during the late Cenozoic is classically regarded as an adaptive response to the near-global spread of grass-dominated habitats. Precocious hypsodonty in middle Eocene (∼38 million years (Myr) ago) faunas from Patagonia, South America, is therefore thought to signal Earth's first grasslands, 20 million years earlier than elsewhere. Here, using a high-resolution, 43-18 million-year record of plant silica (phytoliths) from Patagonia, we show that although open-habitat grasses existed in southern South America since the middle Eocene (∼40 Myr ago), they were minor floral components in overall forested habitats between 40 and 18 Myr ago. Thus, distinctly different, continent-specific environmental conditions (arid grasslands versus ash-laden forests) triggered convergent cheek-tooth evolution in Cenozoic herbivores. Hypsodonty evolution is an important example where the present is an insufficient key to the past, and contextual information from fossils is vital for understanding processes of adaptation.Facultad de Ciencias Naturales y Muse

Decoupling the spread of grasslands from the evolution of grazer-type herbivores in South America

The evolution of high-crowned cheek teeth (hypsodonty) in herbivorous mammals during the late Cenozoic is classically regarded as an adaptive response to the near-global spread of grass-dominated habitats. Precocious hypsodonty in middle Eocene (∼38 million years (Myr) ago) faunas from Patagonia, South America, is therefore thought to signal Earth's first grasslands, 20 million years earlier than elsewhere. Here, using a high-resolution, 43-18 million-year record of plant silica (phytoliths) from Patagonia, we show that although open-habitat grasses existed in southern South America since the middle Eocene (∼40 Myr ago), they were minor floral components in overall forested habitats between 40 and 18 Myr ago. Thus, distinctly different, continent-specific environmental conditions (arid grasslands versus ash-laden forests) triggered convergent cheek-tooth evolution in Cenozoic herbivores. Hypsodonty evolution is an important example where the present is an insufficient key to the past, and contextual information from fossils is vital for understanding processes of adaptation.Facultad de Ciencias Naturales y Muse

AMERICAN CHORAL DIRECTORS ASSOCIATION EASTERN DIVISION CONVENTION

An Interactive Qualifying Project is a project that seeks to relate technology and science to societal or human needs. The aim of our project is to gain a better understanding of how new technologies, such as paperless music or the Choral Digital Folder, can be implemented into the music world. It is our hope that by moving to technology based platform we can not only save valuable resources but also to provide musicians with better ways to share their music with the world

Feasibility of a novel exercise prehabilitation programme in patients scheduled for elective colorectal surgery: a feasibility randomised controlled trial

© 2019, The Author(s). Background and objectives: To investigate the feasibility of delivering a functional exercise-based prehabilitation intervention and its effects on postoperative length of hospital stay, preoperative physical functioning and health-related quality of life in elective colorectal surgery. Materials and methods: In this randomised controlled feasibility trial, 22 elective colorectal surgery patients were randomly assigned to exercise prehabilitation (n = 11) or standard care (n = 11). Feasibility of delivering the intervention was assessed based on recruitment and compliance to the intervention. Impact on postoperative length of hospital stay and complications, preoperative physical functioning (timed up and go test, five times sit to stand, stair climb test, handgrip dynamometry and 6-min walk test) and health-related quality of life were also assessed. Results: Over 42% of patients (84/198) screened were deemed ineligible for prehabilitation due to insufficient time existing prior to scheduled surgery. Of those who were eligible, approximately 18% consented to the trial. Median length of hospital stay was 8 [range 6–27] and 10 [range 5–12] days respectively for the standard care and prehabilitation groups. Patterns towards preoperative improvements for the timed up and go test, stair climb test and 6-min walk test were observed for all participants receiving prehabilitation but not standard care. Conclusions: Despite prehabilitation appearing to convey positive benefits on physical functioning, short surgical wait times and patient engagement represent major obstacles to implementing exercise prehabilitation programmes in colorectal cancer patients

The applicability of FIR fine-structure lines as Star Formation Rate tracers over wide ranges of metallicities and galaxy types

We analyze the applicability of far-infrared fine-structure lines [CII] 158 micron, [OI] 63 micron and [OIII] 88 micron to reliably trace the star formation rate (SFR) in a sample of low-metallicity dwarf galaxies from the Herschel Dwarf Galaxy Survey and compare with a broad sample of galaxies of various types and metallicities in the literature. We study the trends and scatter in the relation between the SFR (as traced by GALEX FUV and MIPS 24 micron) and far-infrared line emission, on spatially resolved and global galaxy scales, in dwarf galaxies. We assemble far-infrared line measurements from the literature and infer whether the far-infrared lines can probe the SFR (as traced by the total-infrared luminosity) in a variety of galaxy populations. In metal-poor dwarfs, the [OI] and [OIII] lines show the strongest correlation with the SFR with an uncertainty on the SFR estimates better than a factor of 2, while the link between [CII] emission and the SFR is more dispersed (uncertainty factor of 2.6). The increased scatter in the SFR-L([CII]) relation towards low metal abundances, warm dust temperatures, large filling factors of diffuse, highly ionized gas suggests that other cooling lines start to dominate depending on the density and ionization state of the gas. For the literature sample, we evaluate the correlations for a number of different galaxy populations. The [CII] and [OI] lines are considered to be reliable SFR tracers in starburst galaxies, recovering the star formation activity within an uncertainty of factor 2. [Abridged]Comment: 35 pages, 13 figures, accepted for publication in A&A on May 7th 201